BtaEX0023442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64895165-64896712:+
Coord C1 exon
chr13:64895165-64895257
Coord A exon
chr13:64895396-64895459
Coord C2 exon
chr13:64896614-64896712
Length
64 bp
Sequences
Splice sites
3' ss Seq
GGCTGCTCCTCTGCCCACAGGGC
3' ss Score
10.25
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGCACCCTCGAGGATCAGATCATCGAGGCTAACCCCGCCATGGAGGCTTTCGGCAATGCCAAGACCCTGCGCAATGACAACTCGTCCCGCTTT
Seq A exon
GGCAAGTTCATCCGCATTCACTTTGGTCCCTCTGGGAAGCTGGCATCAGCGGATATTGACAGCT
Seq C2 exon
ATCTCCTGGAGAAGTCACGGGTGATCTTCCAGCTGCCCGGTGAGCGAGGCTACCACGTCTACTACCAGATCCTTTCGGGGAAGAAGCCAGAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATCGAGGCTAACCCCG
R:
TAGTAGACGTGGTAGCCTCGC
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development