MmuEX0030379 @ mm9
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155443384-155444568:+
Coord C1 exon
chr2:155443384-155443476
Coord A exon
chr2:155443598-155443661
Coord C2 exon
chr2:155444470-155444568
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCATGGTCCCTCCGCTGCAGGGC
3' ss Score
7.02
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGCAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
Seq A exon
GGCAAGTTCATCCGCATCCACTTTGGTCCCACTGGGAAGCTGGCCTCTGCGGACATTGATAGCT
Seq C2 exon
ATCTCCTGGAGAAGTCGCGAGTGATCTTCCAGCTGCCCGGTGAGCGTGGTTACCATGTCTACTACCAGATCCTCTCAGGGAAGAAGCCGGAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATCGAGGCTAACCCTGC
R:
GACATGGTAACCACGCTCACC
Band lengths:
135-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: