RnoEX0057049 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151132447-151133480:+
Coord C1 exon
chr3:151132447-151132539
Coord A exon
chr3:151132663-151132726
Coord C2 exon
chr3:151133382-151133480
Length
64 bp
Sequences
Splice sites
3' ss Seq
GCACGGTTCCTCTGCTGCAGGGC
3' ss Score
7.71
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGTAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
Seq A exon
GGCAAGTTCATCCGCATCCACTTTGGTCCCACTGGGAAGCTGGCCTCTGCGGACATTGACAGCT
Seq C2 exon
ATCTCCTGGAAAAGTCTCGAGTGATCTTCCAGCTGCCCGGTGAGCGTGGTTACCATGTCTACTACCAAATCCTCTCCGGGAAGAAGCCAGAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCTTTTGGTAACGCC
R:
TCTTCCCGGAGAGGATTTGGT
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]