DreEX6091838 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24969791-24970341:-
Coord C1 exon
chr11:24970249-24970341
Coord A exon
chr11:24969974-24970037
Coord C2 exon
chr11:24969791-24969889
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTAAATCCCACTAGGGT
3' ss Score
7.34
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GGAACTTTAGAGGATCAGATCATTGAAGCTAATCCTGCAATGGAGGCTTTTGGAAATGCCAAGACACTGAGGAACGACAACTCGTCCCGTTTT
Seq A exon
GGTAAGTTCATCAGGATCCATTTTGGACCAACAGGGAAACTGGCCTCTGCTGACATTGACATAT
Seq C2 exon
ATCTTCTGGAAAAATCCAGAGTGATATTTCAGCAACCTGGAGAGCGAAGTTACCACATCTACTACCAGATCATGTCACAAAAGAAGCCTGAACTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAATGGAGGCTTTTGGA
R:
GGCTTCTTTTGTGACATGATCTGG
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]