GgaEX1037878 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2960880-2962000:-
Coord C1 exon
chr20:2961947-2962000
Coord A exon
chr20:2961097-2961160
Coord C2 exon
chr20:2960880-2960978
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTAAATGCTTTTAGGGC
3' ss Score
7.28
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ATGGAGGCTTTTGGCAATGCCAAAACCATTAGAAATGACAACTCCTCACGTTTT
Seq A exon
GGCAAGTTCATCCGCATCCATTTTGGCCCCTCGGGGAAGCTGGCCTCTGCAGACATCGACATCT
Seq C2 exon
ATCTTCTGGAAAAATCAAGAGTGATTTTCCAGCAACCCAAAGAGCGAAGCTACCACATCTACTACCAAATCCTCTCTGGGAAGAAACCAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.1=94.4)
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGCCAAAACCATTAGAAATGAC
R:
TTGCAGCTCTGGTTTCTTCCC
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]