BtaEX0023481 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56411659-56444367:+
Coord C1 exon
chr20:56411659-56411817
Coord A exon
chr20:56431161-56431348
Coord C2 exon
chr20:56444233-56444367
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTCACCCCCTGTCCCCGCAGACC
3' ss Score
13.68
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GTATTCACGTACAAGCAGAGCACAATTACACACCAGAAGGTGATGCCTATGCAGCCCACGGATGAGGAGGGCGTGGATGACATGGCCACCCTGACAGAGCTCCACGGGGGTGCCATCATGCACAACTTGTACCAGCGCTACAAGAGAAACCAAATCTAT
Seq A exon
ACCTACATCGGCTCCATCATTGCCTCCGTGAACCCCTACAAGACCATCGCGGGCCTGTACTCGAGGGACGCCGTGGATCGCTACAGCAGGTGCCACCTGGGTGAGCTGCCCCCCCACGTCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCGTGCTCATCAG
Seq C2 exon
TGGTGAAAGTGGCGCAGGGAAAACCGAGAGCACGAAGCTGATCCTCAAGTTTTTATCAGCCATCAGTCAGCAGTCTGTGGACTTGTCCTCGAAGGAGAAGACCTCATCTGTCGAGCAAGCCATTCTTGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'10-11,'10-10,18-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=52.8)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGCACAATTACACACCA
R:
AGGTCTTCTCCTTCGAGGACA
Band lengths:
250-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development