GgaEX1037946 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75544608-75565549:+
Coord C1 exon
chr2:75544608-75544766
Coord A exon
chr2:75560400-75560587
Coord C2 exon
chr2:75565415-75565549
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTTGTGTGCTTGCAGACA
3' ss Score
8.73
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATTCACCTATAAACAGAGCACCATCACTCACCAAAAAGTAACACCTATGCATCAGACAAGTGTGGAGAGCGTGGAAGACATGGCAACGCTAGTAGATCTCCATGAAGGCTCTATTATGCATAACTTATTCCAACGATATCAGCAAGATAAAATCTAT
Seq A exon
ACATACATTGGTTCCATAGTGGCCTCTGTGAACCCTTACAAGACCATCCCGGGCCTGTATGACTGTGCTGCCATGGAGCGATACAGCAAGCACCACATGGGAGAGATTGCACCTCACATCTTCGCCGTGGCGAATGAGTGCTACCGCTGCCTCTGGAAGCGTCATGACAACCAGTGTATCCTCATCAG
Seq C2 exon
TGGTGAAAGTGGTGCTGGTAAGACAGAAAGCACTAAGCTGATTCTCAAGTTCTTGTCTGCAATGAGCCAACATTCGCTGGAGATGTCTTGCAGAGAGAAGACCTTCTGTGTGGAGCAAGCCATTCTTGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'13-12,'13-10,17-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(80.0=52.8)
A:
PF0006316=Myosin_head=FE(66.7=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
ENSGALT00000021128fB9688
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGAGCACCATCACTCACC
R:
CTCTGCAAGACATCTCCAGCG
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]