MmuEX6052947 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25701562-25726523:+
Coord C1 exon
chr15:25701562-25701720
Coord A exon
chr15:25714029-25714216
Coord C2 exon
chr15:25726420-25726523
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTCTGCTTGCAGACC
3' ss Score
11.94
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTTCACCTACAAGCAGAGTACAATCACCAACCAGAAGGTGACAGCTATGCACCCCCTGCACGAGGAGGGCGTGGACGACATGGCTTCCCTGGCCGAGCTCCATGGGGGCTCCATCATGTACAACCTTTTCCAGCGCTACAAAAGGAACCAAATCTAT
Seq A exon
ACCTACATCGGCTCCATCATCGCGTCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCCACCATGGAGGAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATTGCCAACGAATGCTATCGCTGCTTGTGGAAGCGCCATGACAACCAATGTGTCCTCATCAG
Seq C2 exon
AAGAATTTTATTTATCTTTGCCAGAAAACTACCATTACTTGAATCAGTCTGGGTGTACGGAAGACAAGACGATCAGCGACCAGGAATCCTTCAGACAAGTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'11-15,'11-8,16-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=52.8)
A:
PF0006316=Myosin_head=FE(11.8=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGTACAATCACCAACCA
R:
GTCTGAAGGATTCCTGGTCGC
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types