DreEX0048527 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42805422-42823771:-
Coord C1 exon
chr2:42823613-42823771
Coord A exon
chr2:42811166-42811353
Coord C2 exon
chr2:42805422-42805559
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCCATTCTCTGTGTTTGCAGACG
3' ss Score
9.63
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGTACACCTACAAACAGAACGCCGTGAGCAGACAGAGGGTTTACCCAATGCACAGCAGCAGCATCACCAGCGTGGAGGACATGGCAGCCCTACAGGATCTGCATGACGGGGCCATTCTTCACAATCTGCACCTCCGCTACACACAGAAGGCCATATAT
Seq A exon
ACGTACATCGGCTCTATTTTAGTAGCAGTAAACCCGTATGAGAGTCTGTCAGGGCTGTATGACGGCGCGGCTGTAGAGCGATACAGCCGACATCACCTGGGCGAAATCCCTCCTCACATCTACGCCATAGCGAACGAGTGCTACAGATCCCTGTGGAAGCGCTCTAACAACCAGTGTGTGCTCATCAG
Seq C2 exon
TGGTGAGAGTGGAGCAGGTAAAACTGAGAGCACTAAGATGATTCTGCGCTTTCTGTCTGCAATGAGCCAACAAAGTGCAGCGCTTTCAACTTCGAAAACAGCATCGTCACATGTAGAGGAGGCGATTCTGGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'2-3,'2-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=52.8)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAAACAGAACGCCGTGA
R:
GTTGAAAGCGCTGCACTTTGT
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]