HsaEX0041014 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16783335-16818167:-
Coord C1 exon
chr5:16818009-16818167
Coord A exon
chr5:16794646-16794833
Coord C2 exon
chr5:16783335-16783469
Length
188 bp
Sequences
Splice sites
3' ss Seq
GTCTCACTCTGTGCTTGCAGACC
3' ss Score
9.58
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTATTCACTTACAAGCAGAGCACAATTACCCACCAGAAGGTGACTGCTATGCACCCCACGAACGAGGAGGGCGTGGATGACATGGCGTCCTTGACAGAGCTCCATGGCGGCTCCATCATGTATAACTTATTCCAGCGGTATAAGAGAAATCAAATATAT
Seq A exon
ACCTACATCGGCTCCATCCTGGCCTCCGTGAACCCCTACCAGCCCATCGCCGGGCTGTACGAGCCTGCCACCATGGAGCAGTACAGCCGGCGCCACCTGGGCGAGCTGCCCCCGCACATCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCATCCTCATCAG
Seq C2 exon
TGGTGAAAGTGGGGCAGGTAAAACCGAAAGCACTAAATTGATCCTCAAGTTTCTGTCAGTCATCAGTCAACAGTCTTTGGAATTGTCCTTAAAGGAGAAGACATCCTGTGTTGAACGAGCTATTCTTGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(15.5=52.8)
A:
PF0006316=Myosin_head=FE(18.7=100)
C2:
PF0006316=Myosin_head=FE(13.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGACTGCTATGCACCC
R:
AGCTCGTTCAACACAGGATGT
Band lengths:
245-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development