MmuEX6052947 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25631317-25652059:+
Coord C1 exon
chr15:25631317-25631475
Coord A exon
chr15:25643784-25643971
Coord C2 exon
chr15:25651925-25652059
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTCTGCTTGCAGACC
3' ss Score
11.94
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTTCACCTACAAGCAGAGTACAATCACCAACCAGAAGGTGACAGCTATGCACCCCCTGCACGAGGAGGGCGTGGACGACATGGCTTCCCTGGCCGAGCTCCATGGGGGCTCCATCATGTACAACCTTTTCCAGCGCTACAAAAGGAACCAAATCTAT
Seq A exon
ACCTACATCGGCTCCATCATCGCGTCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCCACCATGGAGGAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATTGCCAACGAATGCTATCGCTGCTTGTGGAAGCGCCATGACAACCAATGTGTCCTCATCAG
Seq C2 exon
CGGGGAAAGCGGAGCTGGGAAAACGGAAAGCACCAAGCTGATCCTCAAGTTCCTGTCCGTCATCAGCCAGCAGACTTTGGACCTGGGCCTGCAGGAGAAGACATCCAGCGTCGAGCAAGCCATCCTTCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=52.8)
A:
PF0006316=Myosin_head=FE(9.4=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGACAGCTATGCACCC
R:
TTGAAGGATGGCTTGCTCGAC
Band lengths:
254-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: