RnoEX0057155 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77962626-77985279:+
Coord C1 exon
chr2:77962626-77962784
Coord A exon
chr2:77976119-77976306
Coord C2 exon
chr2:77985145-77985279
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCTCTGCTTGCAGACC
3' ss Score
11.94
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTTCACCTATAAGCAGAGTACAATCACAAACCAGAAGGTGACAGCTATGCACCCCCTGCATGAGGAAGGTGTTGACGACATGGCTTCCCTGACCGAGCTCCACGGAGGCTCCATCATGTACAACCTATTCCAGCGCTACAAGAGGAATCAAATCTAT
Seq A exon
ACCTACATCGGCTCCATCATCGCATCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCTACCATGGAGCAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATAGCCAATGAGTGCTATCGCTGCCTGTGGAAGCGCCATGACAACCAGTGTGTGCTCATCAG
Seq C2 exon
TGGTGAAAGCGGGGCAGGGAAAACAGAAAGCACCAAGTTGATCCTCAAGTTTCTGTCCGTCATCAGCCAGCATTCTCTGGACTTGTGCTTACAGGAGAAGTCGTCCAGCGTTGAGCAAGCCATCCTCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=52.8)
A:
PF0006316=Myosin_head=FE(11.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGACAGCTATGCACCC
R:
TTGGAGGATGGCTTGCTCAAC
Band lengths:
254-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]