MmuEX6052946 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25714029-25724008:+
Coord C1 exon
chr15:25714029-25714216
Coord A exon
chr15:25722170-25722304
Coord C2 exon
chr15:25723884-25724008
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTTTGTGTTTCAGCGG
3' ss Score
11.1
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCATCGCGTCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCCACCATGGAGGAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATTGCCAACGAATGCTATCGCTGCTTGTGGAAGCGCCATGACAACCAATGTGTCCTCATCAG
Seq A exon
CGGGGAAAGCGGAGCTGGGAAAACGGAAAGCACCAAGCTGATCCTCAAGTTCCTGTCCGTCATCAGCCAGCAGACTTTGGACCTGGGCCTGCAGGAGAAGACATCCAGCGTCGAGCAAGCCATCCTTCAAAGCAG
Seq C2 exon
CCCAATCATGGAAGCATTTGGCAATGCGAAGACAGTATACAACAACAACTCCAGTCGCTTCGGGAAGTTTGTTCAGCTGAACATCTGCCAGCAGGGAAACATTCAGGGAGGAAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'14-15,'14-11,17-15=AN
Average complexity
A_C3
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.8=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTGCCAGTCTCCACAT
R:
GATAACTTGTCTGAAGGATTCCTGGT
Band lengths:
202-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types