BtaEX6075928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56431161-56446362:+
Coord C1 exon
chr20:56431161-56431348
Coord A exon
chr20:56444233-56444367
Coord C2 exon
chr20:56446238-56446362
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTCTCCATTTTATCTTCCAGTGG
3' ss Score
9.26
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCATTGCCTCCGTGAACCCCTACAAGACCATCGCGGGCCTGTACTCGAGGGACGCCGTGGATCGCTACAGCAGGTGCCACCTGGGTGAGCTGCCCCCCCACGTCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCGTGCTCATCAG
Seq A exon
TGGTGAAAGTGGCGCAGGGAAAACCGAGAGCACGAAGCTGATCCTCAAGTTTTTATCAGCCATCAGTCAGCAGTCTGTGGACTTGTCCTCGAAGGAGAAGACCTCATCTGTCGAGCAAGCCATTCTTGAGAGCAG
Seq C2 exon
CCCCATCATGGAAGCCTTTGGCAATGCCAAGACCGTGTACAACAATAACTCCAGTCGCTTCGGGAAGTTTGTTCAGCTGAACATCGGCCAGAAGGGAAACATCCAGGGCGGGAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'18-13,'18-11,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCATTGCCTCCGTGAAC
R:
ACAAACTTCCCGAAGCGACTG
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]