GgaEX7002067 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75560400-75567136:+
Coord C1 exon
chr2:75560400-75560587
Coord A exon
chr2:75565415-75565549
Coord C2 exon
chr2:75567012-75567136
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTCTTCTTTCAGTGG
3' ss Score
10.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACATACATTGGTTCCATAGTGGCCTCTGTGAACCCTTACAAGACCATCCCGGGCCTGTATGACTGTGCTGCCATGGAGCGATACAGCAAGCACCACATGGGAGAGATTGCACCTCACATCTTCGCCGTGGCGAATGAGTGCTACCGCTGCCTCTGGAAGCGTCATGACAACCAGTGTATCCTCATCAG
Seq A exon
TGGTGAAAGTGGTGCTGGTAAGACAGAAAGCACTAAGCTGATTCTCAAGTTCTTGTCTGCAATGAGCCAACATTCGCTGGAGATGTCTTGCAGAGAGAAGACCTTCTGTGTGGAGCAAGCCATTCTTGAGAGCAG
Seq C2 exon
CCCTATTATGGAAGCTTTTGGCAATGCGAAGACTGTTTACAACAGCAACTCAAGTCGCTTTGGGAAGTTTATTCAGCTGAACATCTGTCAGAAAGGAAACATTCAGGGAGGAAGAATTATAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'17-13,'17-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(66.7=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
ENSGALT00000021128fB9689
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCATAGTGGCCTCTGT
R:
ACTTCCCAAAGCGACTTGAGT
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]