HsaEX0041015 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16781705-16794833:-
Coord C1 exon
chr5:16794646-16794833
Coord A exon
chr5:16783335-16783469
Coord C2 exon
chr5:16781705-16781829
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTCCGTTTTGTCTTTCAGTGG
3' ss Score
11.71
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCCTGGCCTCCGTGAACCCCTACCAGCCCATCGCCGGGCTGTACGAGCCTGCCACCATGGAGCAGTACAGCCGGCGCCACCTGGGCGAGCTGCCCCCGCACATCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCATCCTCATCAG
Seq A exon
TGGTGAAAGTGGGGCAGGTAAAACCGAAAGCACTAAATTGATCCTCAAGTTTCTGTCAGTCATCAGTCAACAGTCTTTGGAATTGTCCTTAAAGGAGAAGACATCCTGTGTTGAACGAGCTATTCTTGAAAGCAG
Seq C2 exon
CCCCATCATGGAAGCTTTCGGCAATGCGAAGACCGTGTACAACAACAACTCTAGTCGCTTTGGGAAGTTTGTTCAGCTGAACATCTGTCAGAAAGGAAATATTCAGGGCGGGAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(18.7=100)
A:
PF0006316=Myosin_head=FE(13.6=100)
C2:
PF0006316=Myosin_head=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGGAGCAGTACAGCC
R:
TCTACAATTCTCCCGCCCTGA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development