HsaEX0041015 @ hg19
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:7593]
Coordinates
chr5:16781814-16794942:-
Coord C1 exon
chr5:16794755-16794942
Coord A exon
chr5:16783444-16783578
Coord C2 exon
chr5:16781814-16781938
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTCCGTTTTGTCTTTCAGTGG
3' ss Score
11.71
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCCTGGCCTCCGTGAACCCCTACCAGCCCATCGCCGGGCTGTACGAGCCTGCCACCATGGAGCAGTACAGCCGGCGCCACCTGGGCGAGCTGCCCCCGCACATCTTCGCCATCGCCAACGAGTGCTACCGCTGCCTGTGGAAGCGCCACGACAACCAGTGCATCCTCATCAG
Seq A exon
TGGTGAAAGTGGGGCAGGTAAAACCGAAAGCACTAAATTGATCCTCAAGTTTCTGTCAGTCATCAGTCAACAGTCTTTGGAATTGTCCTTAAAGGAGAAGACATCCTGTGTTGAACGAGCTATTCTTGAAAGCAG
Seq C2 exon
CCCCATCATGGAAGCTTTCGGCAATGCGAAGACCGTGTACAACAACAACTCTAGTCGCTTTGGGAAGTTTGTTCAGCTGAACATCTGTCAGAAAGGAAATATTCAGGGCGGGAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(33.9=100)
A:
PF0006316=Myosin_head=FE(24.6=100)
C2:
PF0006316=Myosin_head=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGGAGCAGTACAGCC
R:
TCTACAATTCTCCCGCCCTGA
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)