RnoEX6009028 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77976119-77986956:+
Coord C1 exon
chr2:77976119-77976306
Coord A exon
chr2:77985145-77985279
Coord C2 exon
chr2:77986832-77986956
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGCGTGTTTTGTCTTTCAGTGG
3' ss Score
10.21
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCATCGCATCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCTACCATGGAGCAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATAGCCAATGAGTGCTATCGCTGCCTGTGGAAGCGCCATGACAACCAGTGTGTGCTCATCAG
Seq A exon
TGGTGAAAGCGGGGCAGGGAAAACAGAAAGCACCAAGTTGATCCTCAAGTTTCTGTCCGTCATCAGCCAGCATTCTCTGGACTTGTGCTTACAGGAGAAGTCGTCCAGCGTTGAGCAAGCCATCCTCCAAAGCAG
Seq C2 exon
CCCGATCATGGAAGCATTTGGCAATGCGAAGACCGTATACAACAACAACTCCAGCCGCTTTGGGAAGTTTGTTCAACTGAACATCTGTCAGAAAGGAAACATTCAGGGCGGAAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.0=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCGGCTCCATCATCGC
R:
AAAGCGGCTGGAGTTGTTGTT
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]