DreEX6035422 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12781849-12786627:-
Coord C1 exon
chr9:12786440-12786627
Coord A exon
chr9:12782072-12782206
Coord C2 exon
chr9:12781849-12781987
Length
135 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTGTGTGTGTTCAGTGG
3' ss Score
6.68
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ACTAACATTGGCTCGATCCTGGCAGCCATGAATCCTTATAAGCAGATAGCAGGCCTGTATGACAGCGAGGCGGTGGATGTGTACAGCAGACATCATCTGGGTGAACTTCCTCCACACATCTTCGCCGTGGCCAACGAGTGTTACCGCTGCCTGTGGAAGAGACACGACAGTCAGTGTGTGCTCATCAG
Seq A exon
TGGAGAGAGTGGTGCTGGGAAGACGGAGAGCACTAAACTGCTCCTGAAGTTTCTGTCGGTCATGAGTCAGAACTCCACGGGCTCTCCGCTGTCAGAGAGGACAACCCGAGTCGAGCAGGCCATCGTACAGAGCAG
Seq C2 exon
CCCAATAATGGAGGCTTTTGGAAATGCAAAAACAGTTTACAACAACAACTCCAGTCGCTTCGGAAAGTTCATTCAACTTCACTTCTCCCAGAGTGGAAATATCCAGGGTGGCTGTATTATTGATTATTTGCTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.174 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.3=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTGGCAGCCATGAATCC
R:
TGAACTTTCCGAAGCGACTGG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]