MmuEX6052946 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25643784-25653763:+
Coord C1 exon
chr15:25643784-25643971
Coord A exon
chr15:25651925-25652059
Coord C2 exon
chr15:25653639-25653763
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTTTTGTGTTTCAGCGG
3' ss Score
11.1
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
ACCTACATCGGCTCCATCATCGCGTCAGTGAACCCCTACCAGCCCATCGCTGGCCTGTACGAGCGCGCCACCATGGAGGAGTACAGCAGGTGCCACCTGGGCGAGCTTCCACCGCACATCTTCGCCATTGCCAACGAATGCTATCGCTGCTTGTGGAAGCGCCATGACAACCAATGTGTCCTCATCAG
Seq A exon
CGGGGAAAGCGGAGCTGGGAAAACGGAAAGCACCAAGCTGATCCTCAAGTTCCTGTCCGTCATCAGCCAGCAGACTTTGGACCTGGGCCTGCAGGAGAAGACATCCAGCGTCGAGCAAGCCATCCTTCAAAGCAG
Seq C2 exon
CCCAATCATGGAAGCATTTGGCAATGCGAAGACAGTATACAACAACAACTCCAGTCGCTTCGGGAAGTTTGTTCAGCTGAACATCTGCCAGCAGGGAAACATTCAGGGAGGAAGAATTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.4=100)
A:
PF0006316=Myosin_head=FE(6.8=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCGGCTCCATCATCGC
R:
CGAAGCGACTGGAGTTGTTGT
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: