DreEX6028676 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42804922-42811353:-
Coord C1 exon
chr2:42811166-42811353
Coord A exon
chr2:42805422-42805559
Coord C2 exon
chr2:42804922-42805046
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTTAGTGG
3' ss Score
7.44
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ACGTACATCGGCTCTATTTTAGTAGCAGTAAACCCGTATGAGAGTCTGTCAGGGCTGTATGACGGCGCGGCTGTAGAGCGATACAGCCGACATCACCTGGGCGAAATCCCTCCTCACATCTACGCCATAGCGAACGAGTGCTACAGATCCCTGTGGAAGCGCTCTAACAACCAGTGTGTGCTCATCAG
Seq A exon
TGGTGAGAGTGGAGCAGGTAAAACTGAGAGCACTAAGATGATTCTGCGCTTTCTGTCTGCAATGAGCCAACAAAGTGCAGCGCTTTCAACTTCGAAAACAGCATCGTCACATGTAGAGGAGGCGATTCTGGAGAGCAG
Seq C2 exon
TCCAATAATGGAGGCGTTCGGAAATGCCAAAACTGTTCATAACAACAACTCGAGCCGCTTTGGGAAGTTCATCCAGCTTCATTTCAGCCAACATGGAAACATCCAGGGAGGAAGAATCACGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'5-4,'5-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.3=100)
A:
PF0006316=Myosin_head=FE(6.9=100)
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGAGCGATACAGCCGACA
R:
AGTCCGTGATTCTTCCTCCCT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]