BtaEX0024066 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011994 | NDEL1
Description
nudE neurodevelopment protein 1-like 1 [Source:HGNC Symbol;Acc:HGNC:17620]
Coordinates
chr19:28644735-28647157:+
Coord C1 exon
chr19:28644735-28644832
Coord A exon
chr19:28645947-28646100
Coord C2 exon
chr19:28647009-28647157
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCCACTTTGTTTCTGATTAGCTT
3' ss Score
6.54
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCAGATTTTTCAAGTTTAAAGGAGGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAACAAAG
Seq A exon
CTTCCAGGAAGCTCGGGATGAGCTAGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAGGCAGAGTTGGAGGCACAATTAGTACAGGCTGAACAGAGAAATAGAGACTTGCAAGCTGATAACCAAAGACTGAAGTATGAAGTAGAAGCATTGAAG
Seq C2 exon
GAGAAGCTAGAACATCAATATGCACAGAGCTACAAGCAGGTCTCAGTATTAGAAGATGATTTAAGTCAGACTCGGGCCATTAAGGAGCAGTTACATAAGTATGTAAGAGAGCTGGAACAGGCCAATGATGACCTGGAGCGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011994-'5-6,'5-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.071 C2=0.020
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(34.2=93.1)
A:
PF079267=TPR_MLP1_2=FE(64.6=100),PF0218313=HALZ=PU(75.0=40.4)
C2:
PF0218313=HALZ=PD(17.9=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGATCATGGATGGTGA
R:
TTTTGCTCGCTCCAGGTCATC
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development