MmuEX0031225 @ mm10
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nudE neurodevelopment protein 1 like 1 [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68842020-68845424:-
Coord C1 exon
chr11:68845327-68845424
Coord A exon
chr11:68843821-68843974
Coord C2 exon
chr11:68842020-68842168
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCACTTTGCTTCTGTTTAGCTT
3' ss Score
7.68
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCGGATTTTTCAAGTTTAAAGGAAGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAAAG
Seq A exon
CTTCCAGGAAGCTCGGGATGAGCTAGTTGAGTTCCAGGAAGGAAGCAGAGAGTTAGAAGCAGAGTTGGAGGCACAGTTAGTACAGGCTGAACAAAGAAATAGAGACCTGCAGGCTGATAACCAAAGACTGAAGTATGAAGTGGAGGCGTTAAAG
Seq C2 exon
GAGAAACTAGAGCATCAGTATGCACAGAGCTACAAGCAGGTCTCAGTGTTAGAAGATGATTTAAGTCAGACCCGGGCCATTAAGGAGCAACTGCATAAGTATGTGAGAGAGCTGGAGCAGGCCAATGATGACCTGGAGCGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.081 C2=0.020
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(34.2=93.1),PF088265=DMPK_coil=PU(14.3=31.0)
A:
PF079267=TPR_MLP1_2=FE(64.6=100),PF088265=DMPK_coil=FE(81.0=100)
C2:
PF0218313=HALZ=PD(17.9=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGATCATGGATGGTGA
R:
TTTTGCTCGCTCCAGGTCATC
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types