GgaEX0001260 @ galGal3
Exon Skipping
Gene
ENSGALG00000001163 | NDEL1_CHICK
Description
NA
Coordinates
chr18:1670612-1673653:+
Coord C1 exon
chr18:1670612-1670709
Coord A exon
chr18:1672114-1672267
Coord C2 exon
chr18:1673505-1673653
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGATGAAATCTCCTTACAGCTT
3' ss Score
7.5
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTCATATTGAACATGGACAGTGAGGAAATTCCGACCTTCTCAAGTCCAAAGGAGGAAACTGCTTATTGGAAAGAGCTTTCCTTGAAGTACAAACAAAG
Seq A exon
CTTCCAGGAAGCTCGTGAAGAGCTGGCTGAATTTCAGGAGGGAAGCAGAGAATTAGAAGCTGAGTTGGAAGCACAGCTGGTGCAGGCTGAGCAGAGGAATAGGGATTTACAAGCAGATAACCAAAGGCTGAAATATGAAGTGGAAACATTAAAG
Seq C2 exon
GAGAAACTGGAGCACCAGTATGCACAAAGCTACAAGCAAGTGTCATTGTTAGAGGATGACCTGAGCCAGACACGGGCCATTAAAGACCAGCTTCATAAGTATGTCAGGGAGCTGGAGCAGGCCAATGATGACTTGGAACGTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001163-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.269 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0218313=HALZ=PU(75.0=40.4)
C2:
PF0218313=HALZ=PD(17.9=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACATGGACAGTGAGGAA
R:
CTCTTTGCACGTTCCAAGTCA
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]