MmuEX0031225 @ mm9
Exon Skipping
Gene
ENSMUSG00000018736 | Ndel1
Description
nuclear distribution gene E-like homolog 1 (A. nidulans) [Source:MGI Symbol;Acc:MGI:1932915]
Coordinates
chr11:68655522-68658926:-
Coord C1 exon
chr11:68658829-68658926
Coord A exon
chr11:68657323-68657476
Coord C2 exon
chr11:68655522-68655670
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCACTTTGCTTCTGTTTAGCTT
3' ss Score
7.68
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCGGATTTTTCAAGTTTAAAGGAAGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAAAG
Seq A exon
CTTCCAGGAAGCTCGGGATGAGCTAGTTGAGTTCCAGGAAGGAAGCAGAGAGTTAGAAGCAGAGTTGGAGGCACAGTTAGTACAGGCTGAACAAAGAAATAGAGACCTGCAGGCTGATAACCAAAGACTGAAGTATGAAGTGGAGGCGTTAAAG
Seq C2 exon
GAGAAACTAGAGCATCAGTATGCACAGAGCTACAAGCAGGTCTCAGTGTTAGAAGATGATTTAAGTCAGACCCGGGCCATTAAGGAGCAACTGCATAAGTATGTGAGAGAGCTGGAGCAGGCCAATGATGACCTGGAGCGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018736-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.096 C2=0.020
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(34.2=93.1)
A:
PF079267=TPR_MLP1_2=FE(64.6=100),PF0218313=HALZ=PU(75.0=40.4)
C2:
PF0218313=HALZ=PD(17.9=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGATCATGGATGGTGA
R:
TTTTGCTCGCTCCAGGTCATC
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: