RnoEX0058766 @ rn6
Exon Skipping
Gene
ENSRNOG00000004139 | Ndel1
Description
nudE neurodevelopment protein 1-like 1 [Source:RGD Symbol;Acc:621235]
Coordinates
chr10:55431516-55436069:-
Coord C1 exon
chr10:55435972-55436069
Coord A exon
chr10:55434250-55434403
Coord C2 exon
chr10:55431516-55431664
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCCACTTTGCTTCTGTTTAGCTT
3' ss Score
7.68
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GCTTTCTTGATCATGGATGGTGAAGATATACCGGATTTTTCAAGTTTAAAGGAAGAAACTGCTTATTGGAAGGAACTTTCCTTGAAGTATAAGCAAAG
Seq A exon
CTTCCAGGAAGCTCGGGATGAGCTAGTTGAATTCCAGGAAGGAAGCAGAGAATTAGAAGCAGAATTGGAGGCACAGTTAGTACAGGCTGAACAAAGAAATAGAGACCTGCAGGCTGATAACCAAAGACTGAAATACGAAGTGGAGGCGTTAAAG
Seq C2 exon
GAGAAACTAGAGCATCAGTATGCACAGAGCTATAAGCAGGTCTCAGTGTTAGAAGATGATTTAAGTCAGACCCGGGCCATTAAGGAGCAACTGCATAAGTATGTGAGAGAGCTGGAGCAGGCCAATGATGACCTGGAGCGAGCAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004139_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.123 C2=0.048
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(34.2=93.1),PF121283=DUF3584=PU(18.8=82.8),PF102414=KxDL=PU(10.0=24.1)
A:
PF079267=TPR_MLP1_2=FE(64.6=100),PF121283=DUF3584=FE(39.8=100),PF102414=KxDL=FE(72.9=100),PF0218313=HALZ=PU(75.0=40.4)
C2:
PF121283=DUF3584=FE(38.3=100),PF102414=KxDL=PD(14.3=20.0),PF0218313=HALZ=PD(17.9=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTTGATCATGGATGGTGA
R:
TTTTGCTCGCTCCAGGTCATC
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]