DreEX6017863 @ danRer10
Exon Skipping
Gene
ENSDARG00000103902 | nde1
Description
nudE neurodevelopment protein 1 [Source:ZFIN;Acc:ZDB-GENE-050913-61]
Coordinates
chr3:36531997-36538336:+
Coord C1 exon
chr3:36531997-36532101
Coord A exon
chr3:36532594-36532747
Coord C2 exon
chr3:36538188-36538336
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGGGATCTCTGCACTTTCAGGGC
3' ss Score
8.26
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TAAGCTTGATTGAACAGCAATGAGTGACCCAGAGCCAGCATCGTTTGATTCTGTCGAACAAGAGAGAGACTACTGGAAGGAACAGGCTGACAAATGCAAGCAGAG
Seq A exon
GGCTGAGGAGGCACAGGAGGAGCTGCAGGAGTTTCAGCAGATGAGTCGAGACTATGAGGTGGAGCTGGAGACCGAGCTGAAGCAGTGTGACGCACGCAATCGGGAACTCCTTACAGCCAACAACAGACTCCGCATGGAGCTAGAAAACTACAAG
Seq C2 exon
GAGAAGTATGAAACGCAGCACTCAGAGGCAGTCAGGCAGATCTCGACTCTAGAAAGAGACCTGGCAGAGACCACAGCCATCAAGGACCAACTGCACAAGTATATCCGAGAGTTGGAGCAGTCCAATGATGACCTGGAAAGAGCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103902-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.793 A=0.500 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF065827=DUF1136=WD(100=46.0),PF151481=Apolipo_F=PU(31.6=86.0),PF0252012=DUF148=PU(44.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGCAATGAGTGACCCA
R:
TCTTAGCTCTTTCCAGGTCATCA
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]