GgaEX1039135 @ galGal4
Exon Skipping
Gene
ENSGALG00000006500 | NDE1
Description
Nuclear distribution protein nudE homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZMC9]
Coordinates
chr14:7547259-7550280:+
Coord C1 exon
chr14:7547259-7547387
Coord A exon
chr14:7547760-7547913
Coord C2 exon
chr14:7550132-7550280
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGCTGGAACTGTGTTTTAGTGC
3' ss Score
5.92
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGCAAAAAAATGAAACAGGAGTTTTAAACTCTGAGGACTTGCCATGGAAGACTCAGAAGAACATCACTTCAGCTCGGTTGAAGAGGAAACCAGATACTGGAAAGAGTTGGCTATGAAATACAAGCAATG
Seq A exon
TGCTGAGAATATACAGGAGGAACTGTGTGAATTCCAAGAAGGGAGCCGAGAATATGAAGCTGAACTGGAAACTCAGCTGCAGCAAACAGAGTCCAGAAACAGAGATCTTCTTTCAGAAAACAACCGTTTGCGAATAGAACTGGAGTCTGTTAAG
Seq C2 exon
GAAAAGTTTGAAATGCAGCATTCAGAATGGTACAGGCAAGTCTCTGCACTGGAAGATGACTTGGCACAGACAAAAGCTATTAAAGATCAACTTCAGAAATACATTCGAGAACTTGAGCAAGCAAATGATGACTTGGAAAGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=0.288 C2=0.060
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PU(6.9=13.8)
A:
PF088265=DMPK_coil=FE(87.9=100)
C2:
PF088265=DMPK_coil=PD(1.7=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAGGACTTGCCATGGA
R:
TGCTCTTTCCAAGTCATCATTTGC
Band lengths:
246-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]