BtaEX6108684 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14189695-14196656:+
Coord C1 exon
chr25:14189695-14189807
Coord A exon
chr25:14192108-14192261
Coord C2 exon
chr25:14196508-14196656
Length
154 bp
Sequences
Splice sites
3' ss Seq
GACATCTGGGAATCCCGCAGGGC
3' ss Score
4.89
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGGAGTGAACTCTTCCCCCCATTTCCACAATGGCGGACTCGGGCAAAACCTTCAGCTCCGAGGAGGAAGAGGCCAACTATTGGAAAGACCTGGCTATGACCTACAAGCAGAG
Seq A exon
GGCAGAGAACACCCAAGAGGAGCTCCGGGAATTCCAGGAGGAAAGCCGGGAATACGAGGCGGAACTGGAGACACAGCTGCAACAAACTGAGAGCAAAAACAGGGACCTGCTGATGGAAAACAACCACCTTCGCATGGAGCTGGAGACCATCAAG
Seq C2 exon
GAGAAGTTTAAAACACAGCATTCTGAAGGCTACCGGCAGATCTCAGCCTTAGAGGATGACCTTGCCCAGACGAAAGCCATAAAAGATAAACTGCAGAAGTACATCAGAGAGCTGGAGCAAGCCAACGATGACCTGGAAAGAGCCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.856 C2=0.340
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(33.3=92.9),PF040127=PspA_IM30=PU(22.5=57.1),PF063948=Pepsin-I3=PU(5.3=7.1),PF088265=DMPK_coil=PU(3.6=7.1)
A:
PF079267=TPR_MLP1_2=FE(65.4=100),PF040127=PspA_IM30=FE(71.8=100),PF063948=Pepsin-I3=PD(92.1=67.3),PF088265=DMPK_coil=FE(91.1=100)
C2:
PF057016=WEMBL=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCCACAATGGCGGACTC
R:
CGTTTGGCTCTTTCCAGGTCA
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]