GgaEX1039135 @ galGal3
Exon Skipping
Gene
ENSGALG00000006500 | NDE1_CHICK
Description
NA
Coordinates
chr14:7612877-7615897:+
Coord C1 exon
chr14:7612877-7613005
Coord A exon
chr14:7613378-7613531
Coord C2 exon
chr14:7615749-7615897
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGCTGGAACTGTGTTTTAGTGC
3' ss Score
5.92
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGCAAAAAAATGAAACAGGAGTTTTAAACTCTGAGGACTTGCCATGGAAGACTCAGAAGAACATCACTTCAGCTCGGTTGAAGAGGAAACCAGATACTGGAAAGAGTTGGCTATGAAATACAAGCAATG
Seq A exon
TGCTGAGAATATACAGGAGGAACTGTGTGAATTCCAAGAAGGGAGCCGAGAATATGAAGCTGAACTGGAAACTCAGCTGCAGCAAACAGAGTCCAGAAACAGAGATCTTCTTTCAGAAAACAACCGTTTGCGAATAGAACTGGAGTCTGTTAAG
Seq C2 exon
GAAAAGTTTGAAATGCAGCATTCAGAATGGTACAGGCAAGTCTCTGCACTGGAAGATGACTTGGCACAGACAAAAGCTATTAAAGATCAACTTCAGAAATACATTCGAGAACTTGAGCAAGCAAATGATGACTTGGAAAGAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006500-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.279 C2=0.060
Domain overlap (PFAM):
C1:
PF088265=DMPK_coil=PU(6.9=13.8)
A:
PF088265=DMPK_coil=FE(87.9=100)
C2:
PF088265=DMPK_coil=PD(1.7=2.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGAGGACTTGCCATGGA
R:
TGCTCTTTCCAAGTCATCATTTGC
Band lengths:
246-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]