BtaEX0026307 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007758 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr9:102057613-102068801:-
Coord C1 exon
chr9:102068675-102068801
Coord A exon
chr9:102068135-102068184
Coord C2 exon
chr9:102057613-102057753
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTATTACTTTGGCAGCCA
3' ss Score
5.52
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TCAAAGTATCAAGATACAAATATGCAAGGAGTTGTGTATGAACTAAATAGCTATATAGAACAGCGGTTGGATACAGGAGGAGACAACCAGCTACTCCTCTATGAACTGAGCAGCATCATCAAAATCG
Seq A exon
CCACAAAAGCTGACGGATTTGCACTGTATTTCCTTGGAGAGTGCAATAAC
Seq C2 exon
AGCCTTTGTGTGTTTATCCCGCCTGGAATCAAGGAAGGAAAACCCAAGCTCATCCCCGCTGGTCCCATCGCCCAGGGCACCACCACCTCTGCCTATGTGGCCAAGTCCAGGAAAACATTGCTGGTGGAAGACATCCTCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007758-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(8.5=27.9)
A:
PF0159021=GAF=FE(11.3=100)
C2:
PF0159021=GAF=FE(32.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACAACCAGCTACTCCT
R:
ACATAGGCAGAGGTGGTGGTG
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development