MmuEX0034133 @ mm9
Exon Skipping
Gene
ENSMUSG00000023868 | Pde10a
Description
phosphodiesterase 10A [Source:MGI Symbol;Acc:MGI:1345143]
Coordinates
chr17:9121957-9134146:+
Coord C1 exon
chr17:9121957-9122077
Coord A exon
chr17:9123375-9123424
Coord C2 exon
chr17:9134006-9134146
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTATTGCTTTGGCAGCCA
3' ss Score
5.93
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TACCAGGATACGAATATGCAGGGAGTCGTGTACGAGCTGAACAGCTACATAGAGCAGCGCCTGGACACGGGCGGGGACAACCACCTGCTCCTCTATGAGCTCAGCAGCATCATCAGGATAG
Seq A exon
CCACAAAAGCCGACGGATTTGCACTGTACTTCCTTGGAGAGTGCAATAAT
Seq C2 exon
AGCCTGTGTGTGTTCATACCACCCGGGATGAAGGAAGGCCAACCCCGGCTCATCCCTGCAGGGCCCATCACCCAGGGTACCACCATCTCTGCCTACGTGGCCAAGTCTAGGAAGACGTTGTTGGTAGAGGATATCCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023868_MULTIEX2-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(10.4=41.7)
A:
PF0159021=GAF=FE(11.1=100)
C2:
PF0159021=GAF=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAACCACCTGCTCCTCTA
R:
GATGGTGGTACCCTGGGTGAT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: