GgaEX0017362 @ galGal4
Exon Skipping
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42576462-42588810:+
Coord C1 exon
chr3:42576462-42576582
Coord A exon
chr3:42578526-42578575
Coord C2 exon
chr3:42588670-42588810
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTATTATTGTTTTGGTAGCTA
3' ss Score
4.89
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TATCAGGATACGAATATGCAAGGTGTAGTGTATGAATTGAACAGCTACATAGAGCAGCGTCTGGATACAGGAGGAGATAACCAACTACTTTTGTATGAACTGAGCAGCATCATTAAAATCG
Seq A exon
CTACGAAAGCTGATGGATTTGCACTATATTTCCTGGGAGAATGCAATAAT
Seq C2 exon
AGTCTGTGTGTATTTACGCCACCAGGAGCTAAAGAAGGACAACCACGGCTCATTCCTGCAGGGCCCATTGCACATGGCACTACGGTGTCAGCCTATGTAGCCAGATCCAGAAAAACATTGCTAGTAGAAGATATTCTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537-'11-15,'11-13,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(10.4=36.6)
A:
PF0159021=GAF=FE(11.1=100)
C2:
PF0159021=GAF=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATAGAGCAGCGTCTGG
R:
AATGAGCCGTGGTTGTCCTTC
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]