RnoEX0064199 @ rn6
Exon Skipping
Gene
ENSRNOG00000011310 | Pde10a
Description
phosphodiesterase 10A [Source:RGD Symbol;Acc:68434]
Coordinates
chr1:52401234-52415746:-
Coord C1 exon
chr1:52415626-52415746
Coord A exon
chr1:52414237-52414286
Coord C2 exon
chr1:52401234-52401374
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATTGCTTTGGCAGCCA
3' ss Score
6.11
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TACCAGGACACGAACATGCAGGGAGTCGTGTACGAGCTGAACAGCTACATAGAGCAGCGCCTGGACACCGGCGGGGACAACCACCTGCTCCTGTACGAGCTAAGCAGTATCATCAGGATAG
Seq A exon
CCACAAAAGCCGACGGATTTGCACTGTACTTCCTTGGAGAGTGCAATAAT
Seq C2 exon
AGTCTGTGTGTCTTCACACCACCCGGAATGAAGGAAGGTCAACCCCGTCTCATCCCCGCAGGGCCCATCACCCAGGGCACCACCATCTCTGCCTATGTGGCCAAGTCTAGGAAGACCCTGCTGGTAGAGGACATCCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011310_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(10.4=36.6)
A:
PF0159021=GAF=FE(11.1=100)
C2:
PF0159021=GAF=FE(31.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGAACATGCAGGGAGTC
R:
CATTCCGGGTGGTGTGAAGAC
Band lengths:
145-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]