GgaEX0017362 @ galGal3
Exon Skipping
Gene
ENSGALG00000011537 | PDE10A
Description
NA
Coordinates
chr3:45146991-45159696:+
Coord C1 exon
chr3:45146991-45147114
Coord A exon
chr3:45149058-45149107
Coord C2 exon
chr3:45159556-45159696
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTATTATTGTTTTGGTAGCTA
3' ss Score
4.89
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CAGTATCAGGATACGAATATGCAAGGTGTAGTGTATGAATTGAACAGCTACATAGAGCAGCGTCTGGATACAGGAGGAGATAACCAACTACTTTTGTATGAACTGAGCAGCATCATTAAAATCG
Seq A exon
CTACGAAAGCTGATGGATTTGCACTATATTTCCTGGGAGAATGCAATAAT
Seq C2 exon
AGTCTGTGTGTATTTACGCCACCAGGAGCTAAAGAAGGACAACCACGGCTCATTCCTGCAGGGCCCATTGCACATGGCACTACGGTGTCAGCCTATGTAGCCAGATCCAGAAAAACATTGCTAGTAGAAGATATTCTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(10.4=35.7)
A:
PF0159021=GAF=FE(11.2=100)
C2:
PF0159021=GAF=FE(32.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATAGAGCAGCGTCTGG
R:
AATGAGCCGTGGTTGTCCTTC
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]