DreEX6059926 @ danRer10
Exon Skipping
Gene
ENSDARG00000003449 | pde10a
Description
phosphodiesterase 10A [Source:ZFIN;Acc:ZDB-GENE-040426-1115]
Coordinates
chr13:4444506-4453506:+
Coord C1 exon
chr13:4444506-4444626
Coord A exon
chr13:4449274-4449323
Coord C2 exon
chr13:4453366-4453506
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTGTTTTTCCACAGCCA
3' ss Score
10.61
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TACCAGGACACAAATATGCAGAGCGTCGTTTATGAGCTCAACAGCTACATGGAGCAGCGGCTGGACACTGGAGGAGACAACAAACTACTGCTCTATGAGTTGTGCAACATCATTAAAACAG
Seq A exon
CCACTAAAGCTGACGGATTTGCACTTTACTTCCTTGGAGAATGCAACAAT
Seq C2 exon
AGTTTATGTTTGTTCACTCCGACGGGGGCAAAAGAGGGGCTTCCTGGGCTCATCCCCTCTGGTCCCATTACGTTTGGGACCACCATCGCCGCTCACGTTGCAAAGACACGCAAGACACTACTTGTAGAGGACATCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003449-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(9.2=31.7)
A:
PF0159021=GAF=FE(11.3=100)
C2:
PF0159021=GAF=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACTGGAGGAGACAACA
R:
CGTAATGGGACCAGAGGGGAT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]