BtaEX0030223 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104360997-104363425:-
Coord C1 exon
chr11:104363288-104363425
Coord A exon
chr11:104362084-104362172
Coord C2 exon
chr11:104360997-104361071
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTATGGCTTCCAGGAG
3' ss Score
7.35
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
Exon sequences
Seq C1 exon
AGACGACATCTGGTTTGACGATGTTGACCCAGCGGACATCGAAGCGGCCATTGGCCCGGAGGCAGCGAGCATAGCGAGGCAGCAGCTGGGCCAGAGCGAGAGCAGCAGCACGCTGGTGAAGGAGCGGCCCTTCGGCGG
Seq A exon
GAGAAGAGTTTGAAGTTGTTCAGAGGGAAGTCGCGGAGCTGCTCAAGGGCCGGATTCTGGTCGGACACGCGCTGCACAACGACCTCAAG
Seq C2 exon
GCGCTGTTTCTGGGCCACCCGAAGAAGAAGATCCGGGACACTCAGAAGTACAAGCCTTTCAGGACCCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.000 C2=0.280
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=FE(19.2=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTGACCCAGCGGACATC
R:
ACTTCTGAGTGTCCCGGATCT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development