DreEX6083030 @ danRer10
Exon Skipping
Gene
ENSDARG00000088619 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr21:5826799-5830052:+
Coord C1 exon
chr21:5826799-5826992
Coord A exon
chr21:5828900-5828988
Coord C2 exon
chr21:5829978-5830052
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTTGTAATCGACAGGCG
3' ss Score
6.32
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AGTGACTCGTGCGGTTGCGATGGACTGCGAGATGGTGGGTGTTGGATATAAGGGAGAGGACAGTATTTTAGCCCGAGTCTCCCTCGTCAACCACTTCGGGAAATGTATCTATGACAAATACGTCAAACCCACAGAGAAGGTTACGGACTACCGAACGGCGGTTAGCGGCATCAGACCGGACGACATCAAGAATG
Seq A exon
GCGAGGACATCAAAACAGTGCAGAAGGAAGTGGCTCAGATTCTGAAAGGAAGGATTTTAGTGGGACACGCCATTCATAATGATTTAAAG
Seq C2 exon
ATTCTGCTGTTGGATCATCCCAAGAAAATGATCAGAGACACACAGAGATACAAGCCATTCAGGCAGAAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088619-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(39.7=90.9)
A:
PF0092919=RNase_T=FE(19.2=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCCCTCGTCAACCACT
R:
TGGCTTGTATCTCTGTGTGTCT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]