HsaEX6063743 @ hg38
Exon Skipping
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133408768-133412492:-
Coord C1 exon
chr9:133412299-133412492
Coord A exon
chr9:133410985-133411073
Coord C2 exon
chr9:133408768-133408842
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGTTGATTTTCCAGGAG
3' ss Score
9.49
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTAAGGGGGAGGAGAGCATGGCCGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGCGTTTATGACAAGTACGTCAAACCAACCGAGCCCGTGACGGACTATAGGACAGCGGTCAGTGGGATTCGGCCTGAGAACCTCAAGCAGG
Seq A exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
Seq C2 exon
GTACTATTTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATATAAACCTTTCAAGAGTCAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300-'10-9,'10-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.178 C2=0.387
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(39.7=90.9)
A:
PF0092919=RNase_T=FE(25.4=100)
C2:
PF0092919=RNase_T=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTCCATCGTGAACCAG
R:
TCTGTGTGTCCCGAATCTTCT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains