MmuEX0039487 @ mm10
Exon Skipping
Gene
ENSMUSG00000052406 | Rexo4
Description
REX4, 3'-5' exonuclease [Source:MGI Symbol;Acc:MGI:2684957]
Coordinates
chr2:26956289-26960417:-
Coord C1 exon
chr2:26960224-26960417
Coord A exon
chr2:26958479-26958567
Coord C2 exon
chr2:26956289-26956363
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCATTTGGTTTTCAGGAG
3' ss Score
9.54
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CTTGACAAAAGCCTTGGCCCTGGATTGTGAGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCATCGCAGCCCGTGTGTCGATCGTGAACCAGTATGGGAAGTGTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTACAGGACAGCCGTCAGTGGGATCCGGCCTGAGAACCTGAAGCAGG
Seq A exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAG
Seq C2 exon
GTTTTGTTCCTTGACCATCCAAAAAAGAAAATCAGGGACACTCAGAAATTCAAACCATTCAGGAGTCGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052406-'8-12,'8-9,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.320
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(39.7=90.9)
A:
PF0092919=RNase_T=FE(19.2=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCGATCGTGAACCAGT
R:
TGGTTTGAATTTCTGAGTGTCCCT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types