GgaEX1048974 @ galGal4
Exon Skipping
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6903605-6904698:-
Coord C1 exon
chr17:6904505-6904698
Coord A exon
chr17:6903999-6904087
Coord C2 exon
chr17:6903605-6903679
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCATTGTGTGGTATCTGTAGGTG
3' ss Score
8.43
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCTTACAAGAGCTGTAGCTATGGACTGTGAGATGGTGGGAGTGGGACCCAGCGGCGAAGACAGCATTGTGGCCCGTGTGTCCATCGTGAACCTCTTTGGAAAGTGCATTTATGACAAGTATGTCAAGCCTACAGAAGAGGTGACGGATTACAGAACAGCTGTTAGTGGCATACGACCTGAGCATCTAAAGACAG
Seq A exon
GTGAAGACTTTAAAACAGTTCAGAAGGAAGTCGCTGATATCTTGAATGGAAGGATTTTAGTTGGGCATGCATTACACAATGACCTAAAG
Seq C2 exon
GTCCTATTTCTTGATCATCCTAAGAAGAAAATACGTGACACACAAAAATACAAACCTTTCAGACAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(39.7=90.9)
A:
PF0092919=RNase_T=FE(19.2=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGTCCATCGTGAACCTC
R:
AGGTTTGTATTTTTGTGTGTCACGT
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]