MmuEX0039487 @ mm9
Exon Skipping
Gene
ENSMUSG00000052406 | Rexo4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2684957]
Coordinates
chr2:26811809-26816260:-
Coord C1 exon
chr2:26816123-26816260
Coord A exon
chr2:26813999-26814087
Coord C2 exon
chr2:26811809-26811883
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCATTTGGTTTTCAGGAG
3' ss Score
9.54
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGG
Seq A exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAG
Seq C2 exon
GTTTTGTTCCTTGACCATCCAAAAAAGAAAATCAGGGACACTCAGAAATTCAAACCATTCAGGAGTCGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052406_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.000 C2=0.320
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=FE(31.5=100),PF0092919=RNase_T=PU(14.0=20.0)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGATATTGAGGATGCCA
R:
ACTCGACTCCTGAATGGTTTGA
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: