RnoEX0075295 @ rn6
Exon Skipping
Gene
ENSRNOG00000027867 | Rexo4
Description
REX4 homolog, 3'-5' exonuclease [Source:RGD Symbol;Acc:1306220]
Coordinates
chr3:5503433-5507147:-
Coord C1 exon
chr3:5507010-5507147
Coord A exon
chr3:5505446-5505534
Coord C2 exon
chr3:5503433-5503507
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCGTTTGGTTTTCAGGAG
3' ss Score
9.62
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GGAAGACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGCTGCTGTAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGACTGGGGCAGAGGACAAGTACCATCTCCCTGGTGAAGGAACAGGCCTTTGGCGG
Seq A exon
GAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGCAATGTTGAAGGGCAGAATCCTGGTGGGGCACGCGCTCCGCAATGATTTAAAG
Seq C2 exon
GTTCTGTTCCTTGAACATCCGAAAAAGAAAATCAGGGACACCCAAAAATTCAAACCGTTCAGGAGTCTAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027867_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0092919=RNase_T=FE(19.2=100)
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGATATTGAGGCTGCTGT
R:
CGGTTTGAATTTTTGGGTGTCCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]