BtaEX0031459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95964491-95966770:-
Coord C1 exon
chr11:95966675-95966770
Coord A exon
chr11:95966055-95966141
Coord C2 exon
chr11:95964491-95964589
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTATCTCCTGTGTAAAACAGACA
3' ss Score
5.46
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAATTCCAGCAGCAGCATCG
Seq A exon
ACAAGTCTTGGATAATCGGTACGGCTTGAAGCGGTGGCAAATAGGGGAAATTGCTTCTAAGATCGGGCAGCTCTACTACCATTATTA
Seq C2 exon
CCTACGCACATCTGAGACCAGCTATCTGAATGAGGCTTTCTCCTTCTATTCTGCAATCAGACAGAGATCTTACTATTCTCAAGTCAATAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.5=100)
A:
PF120703=DUF3550=FE(5.8=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGACAGAAGCAGTGGCAG
R:
TGACTTGAGAATAGTAAGATCTCTGT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development