HsaEX0011621 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127789091-127818286:-
Coord C1 exon
chr9:127818155-127818286
Coord A exon
chr9:127790671-127790757
Coord C2 exon
chr9:127789091-127789189
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGTATCCTATATAAAACAGACA
3' ss Score
4.03
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGCTGAAGATGATATCCCACAGGGAGAGAGGAAAACAGTTACAGATTTTTGTTATCTTCTGGATAAATCTAAGCAACTGTTCAATGGGTTAAG
Seq A exon
ACAAGTCTTGGATAATCGGTATGGCTTGAAGCGCTGGCAAATAGGAGAAATTGCTTCCAAGATTGGGCAGCTATACTATCATTATTA
Seq C2 exon
CTTACGCACATCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATTCTCAAGTCAATAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611_MULTIEX2-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(2.8=31.1)
A:
PF120703=DUF3550=FE(5.8=100)
C2:
PF120703=DUF3550=FE(10.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTAAAGAAATCATGTCCTCTGG
R:
TGCAGAATAGAAGGAAAAAGCCTCA
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)