DreEX0064320 @ danRer10
Exon Skipping
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31430235-31430806:+
Coord C1 exon
chr5:31430235-31430330
Coord A exon
chr5:31430537-31430623
Coord C2 exon
chr5:31430708-31430806
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTGCATTACTGGAGAATAGACA
3' ss Score
-4.97
5' ss Seq
CTAGTAAGG
5' ss Score
5.17
Exon sequences
Seq C1 exon
GGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAG
Seq A exon
ACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTA
Seq C2 exon
CCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(17.1=100)
A:
PF120703=DUF3550=FE(15.5=100)
C2:
PF120703=DUF3550=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGTCCTATTTTGGCC
R:
TGTCTTCTTTGTTGACCTGGTGG
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]