HsaEX0011621 @ hg38
Exon Skipping
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:125026812-125029739:-
Coord C1 exon
chr9:125029644-125029739
Coord A exon
chr9:125028392-125028478
Coord C2 exon
chr9:125026812-125026910
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGTATCCTATATAAAACAGACA
3' ss Score
4.03
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAGTTCCAGCAGCAGCATCG
Seq A exon
ACAAGTCTTGGATAATCGGTATGGCTTGAAGCGCTGGCAAATAGGAGAAATTGCTTCCAAGATTGGGCAGCTATACTATCATTATTA
Seq C2 exon
CTTACGCACATCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATTCTCAAGTCAATAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'15-23,'15-22,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(17.0=24.2),PF120703=DUF3550=FE(6.6=100)
A:
PF120703=DUF3550=FE(24.8=100)
C2:
PF120703=DUF3550=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGGACAGAAGCAGTGGCA
R:
TGATTGCAGAATAGAAGGAAAAAGCC
Band lengths:
143-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development