GgaEX0001103 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9542177-9543684:+
Coord C1 exon
chr17:9542177-9542272
Coord A exon
chr17:9542917-9543003
Coord C2 exon
chr17:9543586-9543684
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTCTTGCGAAATAGACA
3' ss Score
6.98
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGATTTACCGCAGTATGGGCAGAAGCAGTGGCAATCCTATTTTGGGCGAACGTTTGATGTTTACACCAAACTCTGGAAGTTTCAACAGCAGCATCG
Seq A exon
ACAAGTATTGGACAATCGGTATGGGTTGAAGCGGTGGCAAATTGGGGAAATTGCTTCCAAGATTGGGCAGCTCTATTACCATTATTA
Seq C2 exon
CTTGCGCACTTCTGAAACCAGCTATCTCAATGAAGCTTTCTCCTTCTATTCCGCGATCAGGCAGAGGTCATACTACTCCCAGGTTAACAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037_MULTIEX1-2/7=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.4=100)
A:
PF120703=DUF3550=FE(5.8=100)
C2:
PF120703=DUF3550=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTACCGCAGTATGGGCA
R:
GTATGACCTCTGCCTGATCGC
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]