RnoEX6016683 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23398400-23401198:-
Coord C1 exon
chr3:23401103-23401198
Coord A exon
chr3:23400281-23400367
Coord C2 exon
chr3:23398400-23398498
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCCATATAAACAGACA
3' ss Score
7.07
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGATTTGCCTCAGTATGGACAGAAGCAGTGGCAGTCCTACTTCGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAATTCCAGCAGCAGCATCG
Seq A exon
ACAAGTCTTGGATAATCGGTATGGCTTGAAGCGGTGGCAAATAGGGGAAATCGCTTCCAAGATCGGGCAGCTGTATTACCACTATTA
Seq C2 exon
TTTACGAACTTCTGAGACCAGTTATTTGAATGAGGCTTTCTCCTTCTACTCTGCAATCAGACAGAGGTCATACTACTCTCAAGTCAACAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(6.5=100)
A:
PF120703=DUF3550=FE(5.8=100)
C2:
PF120703=DUF3550=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCAGTGGCAGTCCTA
R:
TGTCCTCTTTGTTGACTTGAGAGT
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]