BtaEX0031465 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9369310-9445301:+
Coord C1 exon
chr10:9369310-9369425
Coord A exon
chr10:9400385-9400462
Coord C2 exon
chr10:9445203-9445301
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGAATTTTATTCCAGGAC
3' ss Score
9
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GGCGGCCTCGCCCGTCTCTCTCTCGGCGCCTGGGTCGGGTGGGTGACGCCGAGCGCGAGATGTCGGACTTCGACAGTAACCCGTTTGCCGACCCGGACCTCAACAACCCTTTCAAG
Seq A exon
GACCCATCAGTTACACAGGTGACAAGAAATGTCCCACCAGGACTTGATGAATACAATCCATTCTCAGATTCTAGAACA
Seq C2 exon
CCTCCACCAGGTAATGTGAAAATGCCTAACGTACCCAGTACACAGCCAGCAATAATGAAGCCAACAGAAGAACATCCAGCTTATACACAGATTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCCGTCTCTCTCTC
R:
TGGCTTCATTATTGCTGGCTGT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development